Package | Description |
---|---|
de.unibi.citec.tcs.alignment |
This package contains the actual AlignmentAlgorithms as well as their return
classes.
|
Modifier and Type | Class and Description |
---|---|
class |
SoftAlignmentFullAlgorithm
This calculates the soft (global) alignment of two sequences similarly to the
Needleman-Wunsch-Algorithm.
|
class |
SoftAlignmentSamplingAlgorithm
This calculates the soft (global) alignment of two sequences similarly to the
Needleman-Wunsch-Algorithm.
|
class |
SoftAlignmentScoreAlgorithm
This calculates the soft (global) alignment of two sequences similarly to the
Needleman-Wunsch-Algorithm.
|
class |
StrictAlignmentFullAlgorithm
This is an implementation of the Needleman-Wunsch-Algorithm for sequence
alignment.
|
class |
StrictAlignmentScoreAlgorithm
This is an implementation of the Needleman-Wunsch-Algorithm for sequence
alignment.
|
class |
StrictAllOptimalAlgorithm
This is an implementation of the Needleman-Wunsch-Algorithm for sequence
alignment.
|
class |
StrictKPathAlgorithm
This is an implementation of the Needleman-Wunsch-Algorithm for sequence
alignment.
|
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