R
- the result class that represents the alignment in some way.public interface AlignmentAlgorithm<R>
Modifier and Type | Method and Description |
---|---|
R |
calculateAlignment(Sequence a,
Sequence b)
This calculates the alignment between the Sequences a and b and returns
it as an instance of the result class for this algorithm.
|
Class<R> |
getResultClass()
This method shall return the class of the alignment result.
|
AlignmentSpecification |
getSpecification()
This should return the specification that is used for this Algorithm.
|
AlignmentSpecification getSpecification()
R calculateAlignment(Sequence a, Sequence b)
a
- The first sequence.b
- The second sequence.Copyright © 2014. All rights reserved.