R
- the result class that represents the alignment in some way.public interface AlignmentAlgorithm<R>
Modifier and Type | Method and Description |
---|---|
R |
calculateAlignment(Sequence a,
Sequence b)
This calculates the alignment between the Sequences a and b and returns
it as an instance of the result class for this algorithm.
|
Class<R> |
getResultClass()
This method shall return the class of the alignment result.
|
AlignmentSpecification |
getSpecification()
This should return the specification that is used for this Algorithm.
|
AlignmentSpecification getSpecification()
R calculateAlignment(Sequence a, Sequence b)
a
- The first sequence.b
- The second sequence.Copyright (C) 2013, 2014 Benjamin Paaßen, Charlie Krüger, Georg Zentgraf, AG Theoretical Computer Science, Centre of Excellence Cognitive Interaction Technology (CITEC), University of Bielefeld, licensed under the AGPL v. 3: http://openresearch.cit-ec.de/projects/tcs