Package | Description |
---|---|
de.unibi.citec.tcs.alignment |
This package contains the actual AlignmentAlgorithms as well as their return
classes.
|
de.unibi.citec.tcs.alignment.comparators |
This package contains comparators that define distances between Values.
|
de.unibi.citec.tcs.alignment.sequence |
This package contains the definition of input Sequences for
AlignmentAlgorithms.
|
de.unibi.citec.tcs.alignment.visualization | |
de.unibi.citec.tcs.alignment.wrappers |
Class and Description |
---|
IndexingScheme
This serves as an abstract superclass for classes that define an indexing
scheme for keywords.
|
Node
This is a node in a Sequence storing values for the keywords defined in the
sequence.
|
NodeSpecification
This specifies the contents of the nodes in a given sequence.
|
Sequence
Usually a sequence for alignments is defined as a sequence of symbols.
|
Value
This represents a single value for a keyword in a given node.
|
Class and Description |
---|
Alphabet
An alphabet is an ordered set of arbitrary symbols.
|
StringValue
This value is supposed to represent strings that are not restricted to a
certain alphabet.
|
SymbolicValue
This is a special value class that is restricted to a finite list of values
defined by an alphabet.
|
Value
This represents a single value for a keyword in a given node.
|
ValueType
This defines all possible types of values.
|
VectorialValue
This value is reserved for numeric vectors, represented internally as
doubles.
|
Class and Description |
---|
AbstractValue
This is a convenience implementation of the Value interface.
|
Alphabet
An alphabet is an ordered set of arbitrary symbols.
|
IndexingScheme
This serves as an abstract superclass for classes that define an indexing
scheme for keywords.
|
KeywordSpecification
This specifies a keyword via its name and the type of its values.
|
Node
This is a node in a Sequence storing values for the keywords defined in the
sequence.
|
NodeSpecification
This specifies the contents of the nodes in a given sequence.
|
Sequence
Usually a sequence for alignments is defined as a sequence of symbols.
|
Value
This represents a single value for a keyword in a given node.
|
ValueType
This defines all possible types of values.
|
Class and Description |
---|
Node
This is a node in a Sequence storing values for the keywords defined in the
sequence.
|
Sequence
Usually a sequence for alignments is defined as a sequence of symbols.
|
Class and Description |
---|
Alphabet
An alphabet is an ordered set of arbitrary symbols.
|
NodeSpecification
This specifies the contents of the nodes in a given sequence.
|
Sequence
Usually a sequence for alignments is defined as a sequence of symbols.
|
VectorialValue
This value is reserved for numeric vectors, represented internally as
doubles.
|
Copyright (C) 2013, 2014 Benjamin Paaßen, Charlie Krüger, Georg Zentgraf, AG Theoretical Computer Science, Centre of Excellence Cognitive Interaction Technology (CITEC), University of Bielefeld, licensed under the AGPL v. 3: http://openresearch.cit-ec.de/projects/tcs