Package | Description |
---|---|
de.unibi.citec.tcs.alignment |
This package contains the actual AlignmentAlgorithms as well as their return
classes.
|
Modifier and Type | Method and Description |
---|---|
SoftAlignmentScoreAlgorithm.ScoreEntry |
SoftAlignmentScoreAlgorithm.createDelInitial(SoftAlignmentScoreAlgorithm.ScoreEntry delOld,
int i,
double delLocal)
This method should not be called from outside!
|
SoftAlignmentScoreAlgorithm.ScoreEntry |
SoftAlignmentScoreAlgorithm.createInitial()
This method should not be called from outside!
|
SoftAlignmentScoreAlgorithm.ScoreEntry |
SoftAlignmentScoreAlgorithm.createInsInitial(SoftAlignmentScoreAlgorithm.ScoreEntry insOld,
int j,
double insLocal)
This method should not be called from outside!
|
SoftAlignmentScoreAlgorithm.ScoreEntry |
SoftAlignmentScoreAlgorithm.createNewEntry(SoftAlignmentScoreAlgorithm.ScoreEntry delOld,
SoftAlignmentScoreAlgorithm.ScoreEntry insOld,
SoftAlignmentScoreAlgorithm.ScoreEntry repOld,
int i,
int j,
double delLocal,
double insLocal,
double repLocal)
This method should not be called from outside!
|
Modifier and Type | Method and Description |
---|---|
SoftAlignmentScoreAlgorithm.ScoreEntry |
SoftAlignmentScoreAlgorithm.createDelInitial(SoftAlignmentScoreAlgorithm.ScoreEntry delOld,
int i,
double delLocal)
This method should not be called from outside!
|
SoftAlignmentScoreAlgorithm.ScoreEntry |
SoftAlignmentScoreAlgorithm.createInsInitial(SoftAlignmentScoreAlgorithm.ScoreEntry insOld,
int j,
double insLocal)
This method should not be called from outside!
|
SoftAlignmentScoreAlgorithm.ScoreEntry |
SoftAlignmentScoreAlgorithm.createNewEntry(SoftAlignmentScoreAlgorithm.ScoreEntry delOld,
SoftAlignmentScoreAlgorithm.ScoreEntry insOld,
SoftAlignmentScoreAlgorithm.ScoreEntry repOld,
int i,
int j,
double delLocal,
double insLocal,
double repLocal)
This method should not be called from outside!
|
Double |
SoftAlignmentScoreAlgorithm.transformToResult(SoftAlignmentScoreAlgorithm.ScoreEntry[][] alignmentMatrix,
Sequence a,
Sequence b)
This method should not be called from outside!
|
Copyright (C) 2013, 2014 Benjamin Paaßen, Charlie Krüger, Georg Zentgraf, AG Theoretical Computer Science, Centre of Excellence Cognitive Interaction Technology (CITEC), University of Bielefeld, licensed under the AGPL v. 3: http://openresearch.cit-ec.de/projects/tcs