Package | Description |
---|---|
de.citec.tcs.alignment |
This module defines the interface for AlignmentAlgorithms as
well as some helper classes.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractAffineAlignmentAlgorithm<R>
This is an implementation of the affine alignment algorithm scheme
combining actually two approaches: First the algorithm of Gotoh et al.
|
class |
SoftAffineAlignmentFullAlgorithm
This implements a local affine alignment similar to Smith-Waterman
and Gotoh.
|
class |
SoftAffineAlignmentScoreAlgorithm
This implements a local affine alignment similar to Smith-Waterman
and Gotoh.
|
class |
StrictAffineAlignmentFullAlgorithm
This implements a local affine alignment similar to Smith-Waterman
and Gotoh.
|
class |
StrictAffineAlignmentScoreAlgorithm
This implements a local affine alignment similar to Smith-Waterman
and Gotoh.
|
Copyright (C) 2013-2015 Benjamin Paaßen, Georg Zentgraf, AG Theoretical Computer Science, Centre of Excellence Cognitive Interaction Technology (CITEC), University of Bielefeld, licensed under the AGPL v. 3: http://openresearch.cit-ec.de/projects/tcs . This documentation is licensed under the conditions of CC-BY-SA 4.0: https://creativecommons.org/licenses/by-sa/4.0/