public class Visualization extends Object
Constructor and Description |
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Visualization() |
Modifier and Type | Method and Description |
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static void |
createHTMLs(AlignmentPath[][] alignments,
ArrayList<String> usedKeys,
String datasetName,
String savePath,
String[] programNames,
ExternalContent[] extContent,
boolean upperTriangle)
Visualizes given alignments in clear and adaptable tables.
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public static void createHTMLs(AlignmentPath[][] alignments, ArrayList<String> usedKeys, String datasetName, String savePath, String[] programNames, ExternalContent[] extContent, boolean upperTriangle)
alignments
- Matrix of alignments.usedKeys
- Keys which should be displayed in the html-output. Put a null
if you want to use all keys specified in alignment and sequence.
The sequence of keys determines the sequance in the subsequent table.datasetName
- The html-output will be combined in a directory under
this name.savePath
- Path were the datasetName-directory will be created.programNames
- Names for the aligned programs.extContent
- Optional; for a description what an external content is
and how it works, see there.upperTriangle
- Determines the appearance of the alignment matrix
and thus the clickable alignments.Copyright © 2014. All rights reserved.