Package de.unibi.citec.tcs.alignment

This package contains the actual AlignmentAlgorithms as well as their return classes.

See: Description

Package de.unibi.citec.tcs.alignment Description

This package contains the actual AlignmentAlgorithms as well as their return classes. Please refer to the AlignmentAlgorithm interface if you want to learn in more detail what we define as an "Alignment" here. If you want to implement a new Algorithm yourself you might want to have a closer look at the AbstractGapAlignmentAlgorithm which implements some generic functionality conveniently. For fast calculation of pairwise alignments between multiple sequences it is recommended to use the ParallelProcessingEngine.
Author:
Benjamin Paassen - bpaassen@techfak.uni-bielefeld.de

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