Package | Description |
---|---|
de.unibi.citec.tcs.alignment |
This package contains the actual AlignmentAlgorithms as well as their return
classes.
|
de.unibi.citec.tcs.alignment.comparators |
This package contains comparators that define distances between Values.
|
de.unibi.citec.tcs.alignment.sequence |
This package contains the definition of input Sequences for
AlignmentAlgorithms.
|
Class and Description |
---|
Comparator
This defines a function that returns a normalized distance between two
objects.
|
DerivableComparator
This is an interface for comparators that have derivable parameters.
|
ReplacementComparator
This comparator defines explicit replacement (and deletion/insertion) costs
for comparison of symbolic values.
|
Class and Description |
---|
Comparator
This defines a function that returns a normalized distance between two
objects.
|
DerivableComparator
This is an interface for comparators that have derivable parameters.
|
GapComparator
This specifies the comparator interface slightly to include the case that
entities might be deleted/inserted.
|
Normalizer
A normalizer specifies a function to normalize arbitrary distance values
between 0 and infinity to the realm of 0 to 1.
|
ReplacementCosts
This is a matrix of parameters specifying costs to replace one symbol of an
alphabet with another one.
|
SkipComparator
This further specifies the AlignmentComparator to include skips.
|
SparseDerivableComparator
Some derivable comparators have the special property that in each alignment
step only a small subset of parameters is needed.
|
SparseLocalDerivative
This is an interface for classes that are able to hold sparse representations
of a local derivative, where only for one or a few parameters the derivative
is non-zero.
|
SparseLocalDerivative.SparseDeriativeEntry |
Class and Description |
---|
Comparator
This defines a function that returns a normalized distance between two
objects.
|
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